Commits · 6cd761669ffbca9d9cd8048f0b2c7c3d7bb78cb2 · Fernando / vesseg · GitLab

13 Feb, 2019 7 commits
- Add Reuben's version of seg app · 6cd76166
  Fernando Perez-Garcia authored Feb 13, 2019
  
  6cd76166
- Use default config at inference for BN · 46d12bdf
  Fernando Perez-Garcia authored Feb 13, 2019
  
  46d12bdf
- Fix job name · afc14883
  Fernando Perez-Garcia authored Feb 13, 2019
  
  afc14883
- Save job files in a new dir · 9b1721f6
  Fernando Perez-Garcia authored Feb 13, 2019
  
  9b1721f6
- Add custom spatial scaling layer · 7c3c0b2a
  Fernando Perez-Garcia authored Feb 13, 2019
  
  7c3c0b2a
- Add custom segmentation application · 20606f82
  Fernando Perez-Garcia authored Feb 13, 2019
  
  20606f82
- Use custom application to train adn infer · 762699dd
  Fernando Perez-Garcia authored Feb 13, 2019
  
  762699dd
08 Feb, 2019 4 commits
- Add script to train a net without batch normalization · 7eac2cdd
  Fernando Perez-Garcia authored Feb 08, 2019
  
  7eac2cdd
- Add HighRes3DNet without BN · 95f7da86
  Fernando Perez-Garcia authored Feb 08, 2019
  
  95f7da86
- Add loss plots to HTMLs · c7c8e0e0
  Fernando Perez-Garcia authored Feb 08, 2019
  
  c7c8e0e0
- Add seaborn to setup · cc8bf34f
  Fernando Perez-Garcia authored Feb 08, 2019
  
  cc8bf34f
07 Feb, 2019 12 commits
- Fix network name · 584ad1d1
  Fernando Perez-Garcia authored Feb 07, 2019
  
  584ad1d1
- Use same window size for inference · 634db1b4
  Fernando Perez-Garcia authored Feb 07, 2019
  
  634db1b4
- Print message when creating sampling maps and labels · c4aa2a64
  Fernando Perez-Garcia authored Feb 07, 2019
  
  c4aa2a64
- Do not run BF correction for wolm · b3039319
  Fernando Perez-Garcia authored Feb 07, 2019
```
For some reason, N4ITK gets stuck for this subject.
```
  b3039319
- Improve logging · dd468eba
  Fernando Perez-Garcia authored Feb 07, 2019
  
  dd468eba
- Add script for multimodal training with different networks · bc591fe5
  Fernando Perez-Garcia authored Feb 07, 2019
  
  bc591fe5
- Add spatial window size to config kwargs · b14174f4
  Fernando Perez-Garcia authored Feb 07, 2019
  
  b14174f4
- Cast whitened images to float32 · 062cad66
  Fernando Perez-Garcia authored Feb 07, 2019
  
  062cad66
- Add more highres3dnets · 86d70a88
  Fernando Perez-Garcia authored Feb 07, 2019
  
  86d70a88
- Fix output message · 3696db7b
  Fernando Perez-Garcia authored Feb 07, 2019
  
  3696db7b
- Print out images to process · 912a418d
  Fernando Perez-Garcia authored Feb 07, 2019
  
  912a418d
- Save whitened images in float32 · 9ae6bd55
  Fernando Perez-Garcia authored Feb 07, 2019
  
  9ae6bd55
06 Feb, 2019 7 commits
- Refactor to register DSA to T1 GAD instead · 355adb61
  Fernando Perez-Garcia authored Feb 06, 2019
  
  355adb61
- Add script for vessel reg test · 63c57150
  Fernando Perez-Garcia authored Feb 06, 2019
  
  63c57150
- Add CLI tool to make the HTMLs · 95bf7a19
  Fernando Perez-Garcia authored Feb 06, 2019
  
  95bf7a19
- Resample using ITK by default · 428ccf3d
  Fernando Perez-Garcia authored Feb 06, 2019
  
  428ccf3d
- Add metrics to HTML · 56291e7c
  Fernando Perez-Garcia authored Feb 06, 2019
  
  56291e7c
- Use parent dir as default title · 3a186cb3
  Fernando Perez-Garcia authored Feb 06, 2019
  
  3a186cb3
- Remove pylint warning · 681a0108
  Fernando Perez-Garcia authored Feb 06, 2019
  
  681a0108
05 Feb, 2019 10 commits
- Refactor potentially slow imports · 8cd6ac3c
  Fernando Perez-Garcia authored Feb 05, 2019
  
  8cd6ac3c
- Fix inputs in model config · 57d042b9
  Fernando Perez-Garcia authored Feb 05, 2019
  
  57d042b9
- Add script to train using T1 and/or T1 GAD · 5b2b8352
  Fernando Perez-Garcia authored Feb 05, 2019
  
  5b2b8352
- Add support for T1 GAD · 278faed6
  Fernando Perez-Garcia authored Feb 05, 2019
  
  278faed6
- Add visualization module · 7c99fe2e
  Fernando Perez-Garcia authored Feb 05, 2019
  
  7c99fe2e
- Use default threshold if not specified · be844d3e
  Fernando Perez-Garcia authored Feb 05, 2019
  
  be844d3e
- Ignore error when FSLDIR is not found · 210ef207
  Fernando Perez-Garcia authored Feb 05, 2019
  
  210ef207
- Add hostname and date to jobs · 201f4d34
  Fernando Perez-Garcia authored Feb 05, 2019
  
  201f4d34
- Remove some job lines as advised by Pritesh · 9117b895
  Fernando Perez-Garcia authored Feb 05, 2019
  
  9117b895
- Fix job lines · da4e392d
  Fernando Perez-Garcia authored Feb 05, 2019
  
  da4e392d