Commit c2439247 authored by Matt Clarkson's avatar Matt Clarkson

Merge branch '27-documentation-update' into 'master'

Resolve "Documentation needs updating to activate the virtual environment created by tox"

Closes #27

See merge request WEISS/SoftwareRepositories/SNAPPY/scikit-surgerybard!6
parents 57e01df2 c499d637
......@@ -15,23 +15,52 @@ Build Your Own Image Guided Surgery System
2. Find a USB camera, there are a few in the lab, or we can use a tablet with a rear facing camera.
3. Get B.A.R.D.
3. Get B.A.R.D.
::
git clone https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerybard/
or navigate to https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerybard
and use the download button
navigate to the scikit-surgerybard directory and run
navigate to the scikit-surgerybard directory and run
::
pip install .
You may need to add
You may need to add
::
pip install --user
if you don't have administrative permissions.
**Another method to get BARD and all its dependant packages is the following**
::
git clone https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerybard.git
Change directory to the newly created `scikit-surgerybard` by
::
cd scikit-surgerybard
Run the tox commands
::
tox
If tox run successfully,
For Mac and Linux, activate the virtual environment using command
::
source .tox/py36/bin/activate
If all goes well the prompt should be preceded by (py36).
For Windows, activate the virtual environment using command
::
.tox\py36\Scripts\activate
If all goes well the prompt should be preceded by (py36).
You should now have BARD setup with all dependancies in your computer. Continue with the next task.
.. _`Medical Imaging Summer School`: https://medicss.cs.ucl.ac.uk/
.. _`OpenCV` : https://opencv.org/
......
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