Commit 6069e5a7 authored by mathpluscode's avatar mathpluscode

update readme and remove ci

parent 02469501
Pipeline #3246 passed with stages
in 1 minute and 2 seconds
......@@ -41,30 +41,15 @@ build mac installer:
tags:
- shared-mac
test Linux:
stage: test
script:
- tox
tags:
- shared-linux
coverage: '/^TOTAL.*\s+(\d+\%)$/'
test macOS:
stage: test
script:
- tox
tags:
- shared-mac
deploy pip to PyPI:
stage: deploy
when: manual
when: manual
only:
- tags
environment:
name: PyPI
url: https://pypi.python.org/pypi/yunguanfu-mil3id2019
url: https://pypi.python.org/pypi/yunguanfu-mil3id2019
tags:
- pip-production
......
......@@ -33,16 +33,11 @@ yunguanfu-mil3id2019 is currently a demo project. It implements Yunguan Fu's pap
Data Set Structure
------------------
The data should be stored in `data/` as follows:
The data should be stored in `data/` where images are stored in ``data/img/`` and videos are stored in ``data/video/``.
- ``data/img/``
- ``data/img/labeled/`` inside which, each folder corresponds to a patient. Some foldes' name contains HLS, these folders are ignored.
- ``data/img/labeled/LR01/`` inside which, each folder corresponds to the images extracted from a video.
- ``data/img/labeled/LR01/530/`` inside which, the images and labels are stored. For instance, if the name of an image is `x_left.png`, the label is available only if `x_leftMask.png` and `x_leftContour.png` both exist. It is possible that the mask file exists but is all black and the contour file doesn't exist.
For images, the labelled data is stored in ``data/img/labeled/``, inside which each folder corresponds to a patient. Some foldes' name contains HLS, these folders are ignored. Inside this folder, each subfolder, e.g. ``LR01``, corresponds to a patient. In this folder, each subfolder corresponds to the images extracted from a video and its labels. For instance, if the name of an image is ``x_left.png``, the label is available only if ``x_leftMask.png`` and ``x_leftContour.png`` both exist. It is possible that the mask file exists but is all black and the contour file doesn't exist.
- ``data/video/`` inside which, each folder corresponds to a patient.
- ``data/video/LR01/`` inside which, each folder corresponds to a video. Compared to the data in the server, the folders are selected and renamed manually to match the labeled data. Often the folder name contains only number ``LS09/556/``, it corresponds to the folder of labeled image ``2016.04.28_10-08-03-556``.
- ``data/video/LR01/530/`` inside which, the video is stored in ``.264`` format.
For videos, each folder of ``data/video/`` corresponds to a patient, inside which, each subfolder corresponds to a video. Compared to the data in the server, the folders are selected and renamed manually to match the labeled data. Often the folder name contains only number ``LS09/556/``, it corresponds to the folder of labeled image ``2016.04.28_10-08-03-556``. Videos are stored in ``.264`` format.
Example Usage
-------------
......
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